SNP Profiles of PA 107   View Data

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 Key

 1234567891011121314
_Input profile
CCAGCGTTTTCCTTTTCCAAAGCCAACT
1._PA_107_[PER]
CCAGCGTTTTCCTTTTCCAAAGCCAACT
2._PA_107_[PER]
CCAGCGTTTTCCTTTTCCAAAGCCAACT
3._PA_107_[PER]
CCAGCGTTTTCCTTTTCCAAAGCCAACT
4._PA_107_[PER]
CCAGCGTTTTCCTTTTCCAAAGCCAACT
5._PA_107_[PER]
CCAGCGTTTTCCTTTTCCAAAGCCAACT
6._PA_107_[PER]
CCAGCGTTTTCCTTTTCCAAAGCCAACT
7._PA_107_[PER]
CCAGCGTTTTCCTTTTCCAAAGCCAACT
8._PA_107_[PER]
CCAGCGTTTTCCTTTTCCAAAGCCAACT
9._PA_107_[PER]
CCAGCGTTTTCCTTTTCCAAAGCCAACT
10._PA_107_[PER]
CCAGCGTTTTCCTTTTCCAAAGCCAACT
11._PA_107_[PER]
CCAGCGTTTTCCTTTTCCAAAGCCAACT
12._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCAAAGCCAACT
13._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCAAAGCCAACT
14._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCAAAGCCAACT
15._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCAAAGCCAACT
16._GC-08-111-3-10
CCAGCGTTTTCCTTTTCCAAAGCCAACT
17._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCAAAGCCAACT
18._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCAAAGCCAACT
19._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCAAAGCCAACT
20._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCAAAGCCAACT
21._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCAAAGCCAACT
22._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCAAAGCCAACT
23._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCAAAGCCAACT
24._PA_107_[PER]
CCAGCGTTTTCCTTTTCCAAAGCCAACT
25._PA_107_[PER]
CCAGCGTTTTCCTTTTCCAAAGCCAACT
26._PA_107_[PER]
CCAGCGTTTTCCTT_CCAAAGCCAACT
27._PA_107_[PER]
CCAGCGTTTTCCTTTTCCAAAGCCAACT
28._PA_107_[PER]
CCAGCGTTTTCCTTTTCCAAAGCC_CT
29._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCAAAGCCAACT
30._GC-08-111-3-10
CCAGCGTTTTCCTTTTCCAAAGCCAACT
31._GC-08-111-3-10
CCAGCGTTTTCCTTTTCCAAAGCCAACT
32._GC-08-111-3-10
CCAGCGTTTTCCTTTTCCAAAGCCAACT
33._GC-08-111-3-10
CCAGCGTTTTCCTTTTCCAAAGCCAACT
34._GC-02-001-1-01
CCAGCGTTTTCCTT_CCAAAGCCAACT
35._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCAAAGCCAACT
36._GC-02-001-1-01
CCAGCGTTTTCCTTTTCCAAAGCC_CT
37._PA_107_[PER]
CCAGCGTTTTCCTTTTCCAAAGCCAACT
38._PA_107_[PER]
CCAGCGTTTTCCTTTTCCAAAGCCAACT
39._PA_107_[PER]
CCAGCGTTTTCCTTTTCCAAAGCCAACT
40._PA_107_[PER]
CCAGCGTTTTCCTTTTCCAAAGCCAACT
41._GC-08-111-3-10
CCAGCGTTTTCCTTTTCCAAAGCCAACT
42._PA_107_[PER]
CCAGCGTTTTCCTTTTCCAAAGCCAACT
43._PA_107_[PER]
CCAGCGTTTTCCTTTTCCAAAGCCAACT
44._RUQ_1728
__CG____TT__AG_AA_
45._RUQ_1728
GGAGCGAAAACCAAAA_AAAGGGAAAG
46._MITC-000340
GGAGCGAAAACCAAAA_AAAGGGAAAG
 1516171819202122232425262728
_Input profile
AACGCTCCGGGGGGCTCCCGTTCTAAGG
1._PA_107_[PER]
AACGCTCCGGGGGGCTCCCGTTCTAAGG
2._PA_107_[PER]
AACGCTCCGGGGGGCTCCCGTTCTAAGG
3._PA_107_[PER]
AACGCTCCGGGGGGCTCCCGTTCTAAGG
4._PA_107_[PER]
AACGCTCCGGGGGGCTCCCGTTCTAAGG
5._PA_107_[PER]
AACGCTCCGGGGGGCTCCCGTTCTAAGG
6._PA_107_[PER]
AACGCTCCGGGGGGCTCCCGTTCTAAGG
7._PA_107_[PER]
AACGCTCCGGGGGGCTCCCGTTCTAAGG
8._PA_107_[PER]
AACGCTCCGGGGGGCTCCCGTTCTAAGG
9._PA_107_[PER]
AACGCTCCGGGGGGCTCCCGTTCTAAGG
10._PA_107_[PER]
AACGCTCCGGGGGGCTCCCGTTCTAAGG
11._PA_107_[PER]
AACGCTCCGGGGGGCTCCCGTTCTAAGG
12._GC-02-001-1-01
AACGCTCCGGGGGGCTCCCGTTCTAAGG
13._GC-02-001-1-01
AACGCTCCGGGGGGCTCCCGTTCTAAGG
14._GC-02-001-1-01
AACGCTCCGGGGGGCTCCCGTTCTAAGG
15._GC-02-001-1-01
AACGCTCCGGGGGGCTCCCGTTCTAAGG
16._GC-08-111-3-10
AACGCTCCGGGGGGCTCCCGTTCTAAGG
17._GC-02-001-1-01
AACGCTCCGGGGGGCTCCCGTTCTAAGG
18._GC-02-001-1-01
AACGCTCCGGGGGGCTCCCGTTCTAAGG
19._GC-02-001-1-01
AACGCTCCGGGGGGCTCCCGTTCTAAGG
20._GC-02-001-1-01
AACGCTCCGGGGGGCTCCCGTTCTAAGG
21._GC-02-001-1-01
AACGCTCCGGGGGGCTCCCGTTCTAAGG
22._GC-02-001-1-01
AACGCTCCGGGGGGCTCCCGTTCTAAGG
23._GC-02-001-1-01
AACGCTCCGGGGGGCTCCCGTTCTAAGG
24._PA_107_[PER]
AACG_CCGGGGGGCTCCCGTTCTAAGG
25._PA_107_[PER]
AACGCTCCGGGGGGCTCCCGTTCTAAGG
26._PA_107_[PER]
AACGCTCCGGGGGGCTCCCGTTCTAAGG
27._PA_107_[PER]
AACGCTCCGGGGGGCTCCCGTTCTAAGG
28._PA_107_[PER]
AACGCTCCGGGGGGCTCCCGTTCTAAGG
29._GC-02-001-1-01
AACGCTCCGGGGGGCTCCCGTTCTAAGG
30._GC-08-111-3-10
AACGCTCCGGGGGGCTCCCGTTCTAAGG
31._GC-08-111-3-10
AACGCTCCGGGGGGCTCCCGTTCTAAGG
32._GC-08-111-3-10
AACG_CCGGGGGGCTCCCGTTCTAAGG
33._GC-08-111-3-10
AACGCTCCGGGGGGCTCCCGTTCTAAGG
34._GC-02-001-1-01
AACGCTCCGGGGGGCTCCCGTTCTAAGG
35._GC-02-001-1-01
AACGCTCCGGGGGGCTCCCGTTCTAAGG
36._GC-02-001-1-01
AACGCTCCGGGGGGCTCCCGTTCTAAGG
37._PA_107_[PER]
AACGCTCCGGGGGGCTCCCGTTCTAAGG
38._PA_107_[PER]
AACGCTCCGGGGGGCTCCCGTTCTAAGG
39._PA_107_[PER]
AACGCTCCGGGGGGCTCCCGTTCTAAGG
40._PA_107_[PER]
ATCGCTCCGGGGGGCTCCCGTTCTAAGG
41._GC-08-111-3-10
ATCGCTCCGGGGGGCTCCCGTTCTAAGG
42._PA_107_[PER]
AACGCTCCGGGGAACTCCCGTTCTAAGG
43._PA_107_[PER]
AACGCTCCGGGGAACTCCCGTTCTAAGG
44._RUQ_1728
____GGGGAA_CCCG__AA_
45._RUQ_1728
AACGAGGGCCCC_AGCCCGAA_AA_
46._MITC-000340
AACGAGGGCCCC_AGCCCGAA_AA_
 2930313233343536373839   
_Input profile
GGAACCAGCCAACTGTACATGGX_XX_XX_X
1._PA_107_[PER]
GGAACCAGCCAACTGTACATGGX_XX_XX_X
2._PA_107_[PER]
GGAACCAGCCAACTGTACATGGX_XX_XX_X
3._PA_107_[PER]
GGAACCAGCCAACTGTACATGGX_XX_XX_X
4._PA_107_[PER]
GGAACCAGCCAACTGTACATGGX_XX_XX_X
5._PA_107_[PER]
GGAACCAGCCAACTGTACATGGX_XX_XX_X
6._PA_107_[PER]
GGAACCAGCCAACTGTACATGGX_XX_XX_X
7._PA_107_[PER]
GGAACCAGCCAACTGTACATGGX_XX_XX_X
8._PA_107_[PER]
GGAACCAGCCAACTGTACATGGX_XX_XX_X
9._PA_107_[PER]
GGAACCAGCCAACTGTACATGGX_XX_XX_X
10._PA_107_[PER]
GGAACCAGCCAACTGTACATGGX_XX_XX_X
11._PA_107_[PER]
GGAACCAGCCAACTGTACATGGX_XX_XX_X
12._GC-02-001-1-01
GGAACCAGCCAACTGTACATGGX_XX_XX_X
13._GC-02-001-1-01
GGAACCAGCCAACTGTACATGGX_XX_XX_X
14._GC-02-001-1-01
GGAACCAGCCAACTGTACATGGX_XX_XX_X
15._GC-02-001-1-01
GGAACCAGCCAACTGTACATGGX_XX_XX_X
16._GC-08-111-3-10
GGAACCAGCCAACTGTACATGGX_XX_XX_X
17._GC-02-001-1-01
GGAACCAGCCAACTGTACATGGX_XX_XX_X
18._GC-02-001-1-01
GGAACCAGCCAACTGTACATGGX_XX_XX_X
19._GC-02-001-1-01
GGAACCAGCCAACTGTACATGGX_XX_XX_X
20._GC-02-001-1-01
GGAACCAGCCAACTGTACATGGX_XX_XX_X
21._GC-02-001-1-01
GGAACCAGCCAACTGTACATGGX_XX_XX_X
22._GC-02-001-1-01
GGAACCAGCCAACTGTACATGGX_XX_XX_X
23._GC-02-001-1-01
GGAACCAGCCAACTGTACATGGX_XX_XX_X
24._PA_107_[PER]
GGAACCAGCCAACTGTACATGGX_XX_XX_X
25._PA_107_[PER]
GGAACCAGCCAACT_ACATGGX_XX_XX_X
26._PA_107_[PER]
GGAACCAGCCAACTGTACATGGX_XX_XX_X
27._PA_107_[PER]
GGAACCAGCCAA_GTACATGGX_XX_XX_X
28._PA_107_[PER]
GGAACCAGCCAACTGTACATGGX_XX_XX_X
29._GC-02-001-1-01
GGAACCAGCCAACT_ACATGGX_XX_XX_X
30._GC-08-111-3-10
GGAACCAGCC_CTGTACATGGX_XX_XX_X
31._GC-08-111-3-10
GGAACCAGCC_CTGTACATGGX_XX_XX_X
32._GC-08-111-3-10
GGAACCAGCCAACTGTACATGGX_XX_XX_X
33._GC-08-111-3-10
GGAACCAGCCAA_GTACATGGX_XX_XX_X
34._GC-02-001-1-01
GGAACCAGCCAACTGTACATGGX_XX_XX_X
35._GC-02-001-1-01
GGAACCAGCCAA_GTACATGGX_XX_XX_X
36._GC-02-001-1-01
GGAACCAGCCAACTGTACATGGX_XX_XX_X
37._PA_107_[PER]
GGAACCAGCCAA_GTACATGGX_XX_XX_X
38._PA_107_[PER]
GGAACCAGCC_CTGTACATGGX_XX_XX_X
39._PA_107_[PER]
GGAACCAGCC_CTGTACATGGX_XX_XX_X
40._PA_107_[PER]
GGAACCAGCC_CTGTACATGGX_XX_XX_X
41._GC-08-111-3-10
GGAACCAGCC_CTGTACATGGX_XX_XX_X
42._PA_107_[PER]
GGAACCAGCCACCTGTACATGGX_XX_XX_X
43._PA_107_[PER]
GGAACCAGCCACCTGTACATGGX_XX_XX_X
44._RUQ_1728
___AG____AC__X_XX_XX_X
45._RUQ_1728
GGAAGGAGGGACAGACACATGGX_XX_XX_X
46._MITC-000340
GGAAGGAGGGACAGACACATGGX_XX_XX_X

Input profile: PA_107_[PER]

 
 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 3
 Dapeng Zhang, 2016

1._PA_107_[PER]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 10
 Dapeng Zhang, 2016

2._PA_107_[PER]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 4 > FP
 Dapeng Zhang, 2016

3._PA_107_[PER]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 14 > F
 Dapeng Zhang, 2016

4._PA_107_[PER]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 14 > F
 Dapeng Zhang, 2016

5._PA_107_[PER]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 1 > FP
 Dapeng Zhang, 2016

6._PA_107_[PER]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 16
 Dapeng Zhang, 2016

7._PA_107_[PER]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 15
 Dapeng Zhang, 2016

8._PA_107_[PER]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 11
 Dapeng Zhang, 2016

9._PA_107_[PER]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8310 10
 Dapeng Zhang, 2016

10._PA_107_[PER]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 9
 Dapeng Zhang, 2016

11._PA_107_[PER]

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 2
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

12._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

13._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

14._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

15._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

16._PA_107_[PER] GC-08-111-3-10

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

17._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

18._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

19._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

20._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

21._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

22._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

23._PA_107_[PER] GC-02-001-1-01

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

24._PA_107_[PER]

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8310 8
 Dapeng Zhang, 2016

25._PA_107_[PER]

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 12
 Dapeng Zhang, 2016

26._PA_107_[PER]

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 8
 Dapeng Zhang, 2016

27._PA_107_[PER]

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 7
 Dapeng Zhang, 2016

28._PA_107_[PER]

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2101 5
 Dapeng Zhang, 2016

29._PA_107_[PER] GC-02-001-1-01

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

30._PA_107_[PER] GC-08-111-3-10

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

31._PA_107_[PER] GC-08-111-3-10

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

32._PA_107_[PER] GC-08-111-3-10

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

33._PA_107_[PER] GC-08-111-3-10

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP1
 Mars, 2018

34._PA_107_[PER] GC-02-001-1-01

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

35._PA_107_[PER] GC-02-001-1-01

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

36._PA_107_[PER] GC-02-001-1-01

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

37._PA_107_[PER]

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8310 4 > FP
 Dapeng Zhang, 2016

38._PA_107_[PER]

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8310 14
 Dapeng Zhang, 2016

39._PA_107_[PER]

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8310 13
 Dapeng Zhang, 2016

40._PA_107_[PER]

98.7 %
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8310 7
 Dapeng Zhang, 2016

41._PA_107_[PER] GC-08-111-3-10

98.7 %
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

42._PA_107_[PER]

96.2 %
39 shared markers

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Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 90 C0213 2B
 Dapeng Zhang, 2016

43._PA_107_[PER]

96.2 %
39 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 284
 Dapeng Zhang, 2016

44._PA_107_[PER] RUQ_1728

91.7 %
12 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

45._PA_107_[PER] RUQ_1728

50 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

46._PA_107_[PER] MITC-000340

50 %
35 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25